SNP Profiles matching AMAZ 12

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	AA	CG	CC	CT	CC	CT	GT	CT	TT	AT	AG	TT	AA
1._GC-05-158-4-11	CC	AA	CG	CC	CT	CC	CT	GT	CT	TT	AT	AG	TT	AA
2._AMAZ_12	CC	AA	CG	CC	CT	_	CT	GT	CT	TT	AT	AG	TT	AA
3._AMAZ_12	CC	AA	CG	CC	CT	_	CT	GT	CT	TT	AT	AG	TT	AA
4._AMAZ_12	CC	AA	CG	CC	CT	_	CT	GT	CT	TT	AT	AG	TT	AA
5._AMAZ_12	CC	AA	CG	CC	CT	_	CT	GT	CT	TT	AT	AG	TT	AA
6._AMAZ_12	CC	AA	CG	CC	CT	_	CT	GT	CT	TT	AT	AG	TT	AA
7._AMAZ_12	CC	AA	CG	CC	CT	_	CT	GT	CT	TT	AT	AG	TT	AA
8._GC-05-010-1-10	CC	AA	CG	CC	CT	_	CT	GT	CT	TT	AT	AG	TT	AA
9._GC-05-010-1-10	CC	AA	CG	CC	CT	_	CT	GT	CT	TT	AT	AG	TT	AA
10._GC-05-010-1-10	CC	AA	CG	CC	CT	_	CT	GT	CT	TT	AT	AG	TT	AA
11._GC-05-010-1-10	CC	AA	CG	CC	CT	_	CT	GT	CT	TT	AT	AG	TT	AA
12._GC-05-158-4-11	CC	AA	CG	CC	CT	_	CT	GT	CT	TT	AT	AG	TT	AA
13._GC-05-158-4-11	CC	AA	CG	CC	CT	_	CT	GT	CT	TT	AT	AG	TT	AA
14._AMAZ_12	CC	AA	CG	CC	CT	_	CT	GT	CT	TT	AT	AG	TT	AA
15._GC-05-010-1-10	CC	AA	CG	CC	CT	_	CT	GT	CT	TT	AT	AG	TT	AA
16._AMAZ_12	CC	AA	CG	CC	CT	_	CT	GT	CT	_	AT	AG	TT	AA
17._GC-05-158-4-11	CC	AA	CG	CC	CT	_	CT	GT	CT	_	AT	AG	TT	AA
18._AMAZ_12	CC	AA	CG	CC	CT	_	CT	GT	CT	TT	AT	AG	TT	AG
19._GC-05-158-4-11	CC	AA	CG	CC	CT	_	CT	GT	CT	TT	AT	AG	TT	AG
20._RUQ_40	_	AA	CG	CC	_	_	_	-	_	_	_	_	TT	AA

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CT	AT	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC
1._GC-05-158-4-11	CT	AT	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC
2._AMAZ_12	CT	AT	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC
3._AMAZ_12	CT	AT	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC
4._AMAZ_12	CT	AT	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC
5._AMAZ_12	CT	AT	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC
6._AMAZ_12	CT	AT	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC
7._AMAZ_12	CT	AT	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC
8._GC-05-010-1-10	CT	AT	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC
9._GC-05-010-1-10	CT	AT	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC
10._GC-05-010-1-10	CT	AT	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC
11._GC-05-010-1-10	CT	AT	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC
12._GC-05-158-4-11	CT	AT	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC
13._GC-05-158-4-11	CT	AT	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC
14._AMAZ_12	CT	AT	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC
15._GC-05-010-1-10	CT	AT	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC
16._AMAZ_12	CT	AT	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC
17._GC-05-158-4-11	CT	AT	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC
18._AMAZ_12	CT	AT	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC
19._GC-05-158-4-11	CT	AT	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC
20._RUQ_40	_	_	_	_	CT	GG	GT	_	CT	AC	CC	GT	CT	AC

	29	30	31	32	33	34	35	36	37	38	39
_Input profile	AG	GG	AT	CT	AA	CG	AA	GT	CC	AA	GG	X_X	X_X	X_X
1._GC-05-158-4-11	AG	GG	AT	CT	AA	CG	AA	GT	CC	AA	GG	X_X	X_X	X_X
2._AMAZ_12	AG	GG	AT	CT	AA	CG	AA	GT	CC	AA	GG	X_X	X_X	X_X
3._AMAZ_12	AG	GG	AT	CT	AA	CG	AA	GT	CC	AA	GG	X_X	X_X	X_X
4._AMAZ_12	AG	GG	AT	CT	AA	CG	AA	GT	CC	AA	GG	X_X	X_X	X_X
5._AMAZ_12	AG	GG	AT	CT	AA	CG	AA	GT	CC	AA	GG	X_X	X_X	X_X
6._AMAZ_12	AG	GG	AT	CT	AA	CG	AA	GT	CC	AA	GG	X_X	X_X	X_X
7._AMAZ_12	AG	GG	AT	CT	AA	CG	AA	GT	CC	AA	GG	X_X	X_X	X_X
8._GC-05-010-1-10	AG	GG	AT	CT	AA	CG	AA	GT	CC	AA	GG	X_X	X_X	X_X
9._GC-05-010-1-10	AG	GG	AT	CT	AA	CG	AA	GT	CC	AA	GG	X_X	X_X	X_X
10._GC-05-010-1-10	AG	GG	AT	CT	AA	CG	AA	GT	CC	AA	GG	X_X	X_X	X_X
11._GC-05-010-1-10	AG	GG	AT	CT	AA	CG	AA	GT	CC	AA	GG	X_X	X_X	X_X
12._GC-05-158-4-11	AG	GG	AT	CT	AA	CG	AA	GT	CC	AA	GG	X_X	X_X	X_X
13._GC-05-158-4-11	AG	GG	AT	CT	AA	CG	AA	GT	CC	AA	GG	X_X	X_X	X_X
14._AMAZ_12	AG	GG	AT	CT	AA	CG	_	GT	CC	AA	GG	X_X	X_X	X_X
15._GC-05-010-1-10	AG	GG	AT	CT	AA	CG	_	GT	CC	AA	GG	X_X	X_X	X_X
16._AMAZ_12	AG	GG	AT	CT	AA	CG	_	GT	_	AA	GG	X_X	X_X	X_X
17._GC-05-158-4-11	AG	GG	AT	CT	AA	CG	_	GT	_	AA	GG	X_X	X_X	X_X
18._AMAZ_12	AG	GG	AT	CT	AA	CG	AA	GT	CC	AA	GG	X_X	X_X	X_X
19._GC-05-158-4-11	AG	GG	AT	CT	AA	CG	AA	GT	CC	AA	GG	X_X	X_X	X_X
20._RUQ_40	AG	_	AT	-	AA	CG	AC	GT	CC	_	_	X_X	X_X	X_X

Input profile: AMAZ_12

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5411 2 > FP

Dapeng Zhang, 2016

1._AMAZ_12 GC-05-158-4-11

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP3

2._AMAZ_12

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5411 1 > FP

Dapeng Zhang, 2016

3._AMAZ_12

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5411 3

Dapeng Zhang, 2016

4._AMAZ_12

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5110 4 > FP

Dapeng Zhang, 2016

5._AMAZ_12

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5110 2 > FP

Dapeng Zhang, 2016

6._AMAZ_12

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5110 5

Dapeng Zhang, 2016

7._AMAZ_12

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5110 3

Dapeng Zhang, 2016

8._AMAZ_12 GC-05-010-1-10

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP1

9._AMAZ_12 GC-05-010-1-10

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

10._AMAZ_12 GC-05-010-1-10

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP2

11._AMAZ_12 GC-05-010-1-10

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

12._AMAZ_12 GC-05-158-4-11

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP4

13._AMAZ_12 GC-05-158-4-11

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

14._AMAZ_12

identical
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5110 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

15._AMAZ_12 GC-05-010-1-10

identical
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

16._AMAZ_12

identical
35 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5411 5

Dapeng Zhang, 2016

17._AMAZ_12 GC-05-158-4-11

identical
35 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

18._AMAZ_12

98.7 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5411 4

Dapeng Zhang, 2016

19._AMAZ_12 GC-05-158-4-11

98.7 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

20._RB_33_/3_[BRA] RUQ_40

97.6 %
21 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP226	35	TcSNP193
36	TcSNP150	37	TcSNP144	38	TcSNP32	39	TcSNP25